Getting audited each year is compulsory – SMSFs can’t lodge their annual income tax return with the ATO until it’s been done.
What a 'clean SMSF audit report' means for your SMSF
A clean audit report means the auditor didn’t find any material issues of concern.
Very few trustees go out of their way to do the wrong thing when it comes to their SMSF and so most hope for a clean bill of health from their auditor. That’s definitely a good thing. But it’s worth understanding what that really means.
It doesn’t mean the auditor examined every single aspect of your super fund. Your auditor is only looking for material issues. This means they may only look at a sample of your fund’s transactions. A lot of the skill of audit lies in knowing how to find the “right” sample that gives them the best chance of spotting a problem.
There are also some things the auditor can’t easily check and so will rely on statements from you. You may have been asked to sign a “trustee representation letter” for your SMSF – this is essentially you making these statements to the auditor. For example, you’re not eligible to be the trustee of your SMSF if you’ve been convicted of certain criminal offences. The auditor will ask you to confirm you haven’t done these things.
When it comes to the financial audit, the auditor isn’t checking all of the tax calculations – that’s your tax agent’s job. The auditor will look more closely if they think your SMSF’s tax is materially wrong but they largely leave the question of what’s tax deductible and what’s not to whoever is preparing your fund’s tax return.
The auditor will do some work to verify that your fund actually owns all the assets appearing on your financial statements. That’s why you might be asked to prove the right name (ie the trustee of your SMSF) is on your fund’s bank account, your investment accounts and title deeds etc. The auditor will also take steps to check these assets really exists. With shares, property etc it’s not that difficult but other more unusual assets can be trickier. For example, does your fund really own that gold, artwork or crypto? You’ll often be asked for extra proof!
The auditor will also want to make sure the fund’s assets are appropriately valued in the financial statements. Again, this is easy where the fund owns cash, shares, managed funds etc as values are readily available. But more questions will be asked in the case of property or investments in unlisted entities.

